Data from: Tales of the unexpected: Phylogeography of the arctic-alpine model plant Saxifraga oppositifolia (Saxifragaceae) revisited
| Main Authors: | Winkler, Manuela, Tribsch, Andreas, Schneeweiss, Gerald M., Brodbeck, Sabine, Gugerli, Felix, Holderegger, Rolf, Abbott, Richard J., Schönswetter, Peter |
|---|---|
| Format: | info dataset Journal |
| Terbitan: |
, 2012
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| Subjects: | |
| Online Access: |
https://zenodo.org/record/5024284 |
| ctrlnum |
5024284 |
|---|---|
| fullrecord |
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<dc schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd"><creator>Winkler, Manuela</creator><creator>Tribsch, Andreas</creator><creator>Schneeweiss, Gerald M.</creator><creator>Brodbeck, Sabine</creator><creator>Gugerli, Felix</creator><creator>Holderegger, Rolf</creator><creator>Abbott, Richard J.</creator><creator>Schönswetter, Peter</creator><date>2012-06-18</date><description>Arctic-alpine biota occupy enormous areas in the Arctic and the northern hemisphere mountain ranges, and have undergone major range shifts during their comparatively short history. The origins of individual arctic-alpine species remain largely unknown. In the case of the Purple saxifrage, Saxifraga oppositifolia, an important model for arctic-alpine plants, phylogeographic studies have remained inconclusive about early stages of the species' spatiotemporal diversification, but have provided evidence for long-range colonization out of a presumed Beringian origin to cover today's circumpolar range. . We re-evaluated the species' large-scale range dynamics based on a geographically extended sampling including crucial areas such as Central Asia and the (south-)eastern European mountain ranges and employing up-to-date phylogeographic analyses of a plastid sequence and a more restricted AFLP data set. In accordance with previous studies, we detected two major plastid DNA lineages also reflected in AFLP divergence, suggesting a long and independent vicariant history. Although we were unable to determine the species' area of origin, our results point to the Alps and probably Central Asia, respectively, as the likely ancestral areas of the two main clades. AFLP data suggested that contact areas between the two clades in Eastern Europe, Northern Siberia and Greenland were secondary. In marked contrast to high levels of diversity revealed in previous studies, populations from the major arctic refugium Beringia did not exhibit any plastid sequence polymorphism. Our study shows that adequate sampling of the southern, refugial populations is crucial for understanding the range dynamics of arctic-alpine species.</description><description>Results Diffusion ModelRange connectivity (Bayes Factors) and ancestral location probabilities among nine discrete geographical regions in Saxifraga oppositifolia inferred using reversible and non-reversible models of geographic diffusion of plastid DNA sequencesResultsDiffusionModelSaxOpp.txtAFLP MatrixAFLP data matrix (excluding not repeatable, monomorphic and single fragments) with individuals in rows and markers in columns. Regions are given in the second column.SaxOpp_AFLP_Matrix.csvCombined AlignmentCombined alignment of the trnTF and psbA-trnH intergenic spacers in Saxifraga oppositifolia.SaxOpp_Alignment.faspsbA-trnH AlignmentAlignment of psbA-trnH intergenic spacer of Saxifraga oppositifolia including GenBank accession numbers (2nd column).SaxOpp_psbA_trnH.txttrnT-trnF AlignmentAlignment of trnT-trnF intergenic spacers of Saxifraga oppositifolia including GenBank accession numbers (2nd column).SaxOpp_trnT_trnF.txt</description><identifier>https://zenodo.org/record/5024284</identifier><identifier>10.5061/dryad.gf3qp</identifier><identifier>oai:zenodo.org:5024284</identifier><relation>doi:10.1111/j.1365-294X.2012.05705.x</relation><relation>url:https://zenodo.org/communities/dryad</relation><rights>info:eu-repo/semantics/openAccess</rights><rights>https://creativecommons.org/publicdomain/zero/1.0/legalcode</rights><subject>Saxifraga oppositifolia</subject><subject>arctic-alpine</subject><subject>Saxifragaceae</subject><title>Data from: Tales of the unexpected: Phylogeography of the arctic-alpine model plant Saxifraga oppositifolia (Saxifragaceae) revisited</title><type>Other:info:eu-repo/semantics/other</type><type>Other:dataset</type><recordID>5024284</recordID></dc>
|
| format |
Other:info:eu-repo/semantics/other Other Other:dataset Journal:Journal Journal |
| author |
Winkler, Manuela Tribsch, Andreas Schneeweiss, Gerald M. Brodbeck, Sabine Gugerli, Felix Holderegger, Rolf Abbott, Richard J. Schönswetter, Peter |
| title |
Data from: Tales of the unexpected: Phylogeography of the arctic-alpine model plant Saxifraga oppositifolia (Saxifragaceae) revisited |
| publishDate |
2012 |
| topic |
Saxifraga oppositifolia arctic-alpine Saxifragaceae |
| url |
https://zenodo.org/record/5024284 |
| contents |
Arctic-alpine biota occupy enormous areas in the Arctic and the northern hemisphere mountain ranges, and have undergone major range shifts during their comparatively short history. The origins of individual arctic-alpine species remain largely unknown. In the case of the Purple saxifrage, Saxifraga oppositifolia, an important model for arctic-alpine plants, phylogeographic studies have remained inconclusive about early stages of the species' spatiotemporal diversification, but have provided evidence for long-range colonization out of a presumed Beringian origin to cover today's circumpolar range. . We re-evaluated the species' large-scale range dynamics based on a geographically extended sampling including crucial areas such as Central Asia and the (south-)eastern European mountain ranges and employing up-to-date phylogeographic analyses of a plastid sequence and a more restricted AFLP data set. In accordance with previous studies, we detected two major plastid DNA lineages also reflected in AFLP divergence, suggesting a long and independent vicariant history. Although we were unable to determine the species' area of origin, our results point to the Alps and probably Central Asia, respectively, as the likely ancestral areas of the two main clades. AFLP data suggested that contact areas between the two clades in Eastern Europe, Northern Siberia and Greenland were secondary. In marked contrast to high levels of diversity revealed in previous studies, populations from the major arctic refugium Beringia did not exhibit any plastid sequence polymorphism. Our study shows that adequate sampling of the southern, refugial populations is crucial for understanding the range dynamics of arctic-alpine species. Results Diffusion ModelRange connectivity (Bayes Factors) and ancestral location probabilities among nine discrete geographical regions in Saxifraga oppositifolia inferred using reversible and non-reversible models of geographic diffusion of plastid DNA sequencesResultsDiffusionModelSaxOpp.txtAFLP MatrixAFLP data matrix (excluding not repeatable, monomorphic and single fragments) with individuals in rows and markers in columns. Regions are given in the second column.SaxOpp_AFLP_Matrix.csvCombined AlignmentCombined alignment of the trnTF and psbA-trnH intergenic spacers in Saxifraga oppositifolia.SaxOpp_Alignment.faspsbA-trnH AlignmentAlignment of psbA-trnH intergenic spacer of Saxifraga oppositifolia including GenBank accession numbers (2nd column).SaxOpp_psbA_trnH.txttrnT-trnF AlignmentAlignment of trnT-trnF intergenic spacers of Saxifraga oppositifolia including GenBank accession numbers (2nd column).SaxOpp_trnT_trnF.txt |
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IOS16997.5024284 |
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ZAIN Publications |
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7213 |
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library:special library |
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Cognizance Journal of Multidisciplinary Studies |
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5267 |
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Cognizance Journal of Multidisciplinary Studies |
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16997 |
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Stockholm |
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2022-06-06T05:24:47Z |
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