pyGenomeTracks main figure data
| Main Authors: | Lucille Lopez-Delisle, Leily Rabbani, Joachim Wolff, Vivek Bhardwaj, Rolf Backofen, Björn Grüning, Fidel Ramı́rez, Thomas Manke |
|---|---|
| Format: | Article Journal |
| Terbitan: |
, 2020
|
| Online Access: |
https://zenodo.org/record/3775381 |
| ctrlnum |
3775381 |
|---|---|
| fullrecord |
<?xml version="1.0"?>
<dc schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd"><creator>Lucille Lopez-Delisle</creator><creator>Leily Rabbani</creator><creator>Joachim Wolff</creator><creator>Vivek Bhardwaj</creator><creator>Rolf Backofen</creator><creator>Björn Grüning</creator><creator>Fidel Ramı́rez</creator><creator>Thomas Manke</creator><date>2020-04-29</date><description>Data used for pyGenomeTracks publication, D. melanogaster dm3; cell type Kc167.
chromatinStates_kc.bed: Van Bortle et al. 2014
CP190.bw: Wood et al. 2011
dm3_genes_compact_no_cg.bed: Ensembl version 78
H3K36me3.bw: The modENCODE Consortium 2010
HiC_Cubenas.h5: Cubeñas-Potts et al. 2016
HiC_Li_et_al.h5: Li et al. 2015
RNAPII.bw: Li et al. 2015
HiC_Cubenas.h5 and HiC_Li_et_al.h5 were created with HiCExplorers hicBuildMatrix, the TAD-files were computed on HiC_Cubenas.h5 with HiCExplorers hicFindTADs. The dm3 genes were pruned by us for a better visual presentation. The file test.arcs was artificially created by us.
The most files were downloaded from http://chorogenome.ie-freiburg.mpg.de/data_sources.html </description><identifier>https://zenodo.org/record/3775381</identifier><identifier>10.5281/zenodo.3775381</identifier><identifier>oai:zenodo.org:3775381</identifier><relation>doi:10.5281/zenodo.3775380</relation><rights>info:eu-repo/semantics/openAccess</rights><rights>https://creativecommons.org/licenses/by/4.0/legalcode</rights><title>pyGenomeTracks main figure data</title><type>Journal:Article</type><type>Journal:Article</type><recordID>3775381</recordID></dc>
|
| format |
Journal:Article Journal Journal:Journal |
| author |
Lucille Lopez-Delisle Leily Rabbani Joachim Wolff Vivek Bhardwaj Rolf Backofen Björn Grüning Fidel Ramı́rez Thomas Manke |
| title |
pyGenomeTracks main figure data |
| publishDate |
2020 |
| url |
https://zenodo.org/record/3775381 |
| contents |
Data used for pyGenomeTracks publication, D. melanogaster dm3; cell type Kc167.
chromatinStates_kc.bed: Van Bortle et al. 2014
CP190.bw: Wood et al. 2011
dm3_genes_compact_no_cg.bed: Ensembl version 78
H3K36me3.bw: The modENCODE Consortium 2010
HiC_Cubenas.h5: Cubeñas-Potts et al. 2016
HiC_Li_et_al.h5: Li et al. 2015
RNAPII.bw: Li et al. 2015
HiC_Cubenas.h5 and HiC_Li_et_al.h5 were created with HiCExplorers hicBuildMatrix, the TAD-files were computed on HiC_Cubenas.h5 with HiCExplorers hicFindTADs. The dm3 genes were pruned by us for a better visual presentation. The file test.arcs was artificially created by us.
The most files were downloaded from http://chorogenome.ie-freiburg.mpg.de/data_sources.html |
| id |
IOS16997.3775381 |
| institution |
ZAIN Publications |
| institution_id |
7213 |
| institution_type |
library:special library |
| library |
Cognizance Journal of Multidisciplinary Studies |
| library_id |
5267 |
| collection |
Cognizance Journal of Multidisciplinary Studies |
| repository_id |
16997 |
| subject_area |
Multidisciplinary |
| city |
Stockholm |
| province |
INTERNASIONAL |
| shared_to_ipusnas_str |
1 |
| repoId |
IOS16997 |
| first_indexed |
2022-06-06T03:14:06Z |
| last_indexed |
2022-06-06T03:14:06Z |
| recordtype |
dc |
| _version_ |
1734897766392397824 |
| score |
17.610287 |