pyGenomeTracks main figure data
| Main Authors: | Lucille Lopez-Delisle, Leily Rabbani, Joachim Wolff, Vivek Bhardwaj, Rolf Backofen, Björn Grüning, Fidel Ramı́rez, Thomas Manke |
|---|---|
| Format: | Article Journal |
| Terbitan: |
, 2020
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| Online Access: |
https://zenodo.org/record/3775381 |
Daftar Isi:
- Data used for pyGenomeTracks publication, D. melanogaster dm3; cell type Kc167. chromatinStates_kc.bed: Van Bortle et al. 2014 CP190.bw: Wood et al. 2011 dm3_genes_compact_no_cg.bed: Ensembl version 78 H3K36me3.bw: The modENCODE Consortium 2010 HiC_Cubenas.h5: Cubeñas-Potts et al. 2016 HiC_Li_et_al.h5: Li et al. 2015 RNAPII.bw: Li et al. 2015 HiC_Cubenas.h5 and HiC_Li_et_al.h5 were created with HiCExplorers hicBuildMatrix, the TAD-files were computed on HiC_Cubenas.h5 with HiCExplorers hicFindTADs. The dm3 genes were pruned by us for a better visual presentation. The file test.arcs was artificially created by us. The most files were downloaded from http://chorogenome.ie-freiburg.mpg.de/data_sources.html